Citation Knijnenburg TA,et al. Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data. BMC genomics, 2009.
Short Description Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data.
Anaerobic carbon limited 4 Anaerobic carbon limited 5 Anaerobic carbon limited 6 Aerobic glucose limited 4 Aerobic glucose limited 5 Aerobic glucose limited 6 C-lim Anaerobic reference (pH 5) #1 C-lim Anaerobic reference (pH 5) #2 C-lim Anaerobic reference (pH 5) #3 C-lim Anaerobic Acetate 1 C-lim Anaerobic Acetate 2 C-lim Anaerobic Acetate 3 C-lim Anaerobic Benzoate 1 C-lim Anaerobic Benzoate 2 C-lim Anaerobic Benzoate 3 C-lim Anaerobic Propionate 1 C-lim Anaerobic Propionate 2 C-lim Anaerobic Propionate 3 C-lim Anaerbic Sorbate 1 C-lim Anaerobic Sorbate 2 C-lim Anaerobic Sorbate 3 12C Chemostat anaerobic C-lim 0.03h-1 (1) 12C C-im anaerobic chemostat 0.03h-1 (2) 12C anaerobic C-lim chemostat 0.03h-1 (3) 30C Anaerobic C-lim chemostat 0.03h-1 (1) 30C anaerobic C-lim chemostat 0.03h-1 (2) 30C anaerobic C-lim chemostat 0.03 h-1 (3) 12C anaerobic N-limitation chemostat 0.03h-1 (1) 12C anaerobic N-lim chemostat 0.03h-1 (2) 12C anaerobic N-lim chemostat 0.03h-1 (3) 30C anaerobic N-lim chemostat 0.03h-1 (1) 30C anaerobic N-lim chemostat 0.03h-1 (2) 30C anaerobic N-lim chemostat 0.03h-1 (3) C-lim aerobic chemostat with ASN as N-source 1 C-lim aerobic chemostat with ASN as N-source 2 C-lim aerobic chemostat with ASN as N-source 3 C-lim aerobic chemostat with Proline as N-source 1 C-lim aerobic chemostat with proline as N-source 2 C-lim aerobic chemostat with proline as N-source 3 C-lim aerobic chemostat with leucine as N-source 1 C-lim aerobic chemostat with leucine as N-source 2 C-lim aerobic chemostat with leucine as N-source 3 C-lim aerobic chemostat with phenylalanine as N-source 2 C-lim aerobic chemostat with phenylalanine as N-source 3 C-lim aerobic chemostat with methionine as N-source 1 C-lim aerobic chemostat with methionine as N-source 2 C-lim aerobic chemostat with methionine as N-source 3 Zinc limited Aerobic chemostat culture -1 Zinc-limited aerobic chemostat culture-2 Zinc-limited Aerobic chemostat culture -3 Zinc-limited Anaerobic chemostat culture-1 Zinc-limited Anaerobic chemostat culture-2 Zinc-limited Anaerobic chemostat culture-3 Carbon-limited Aerobic chemostat culture -1 Carbon-limited Aerobic chemostat culture-2 Carbon-limited Aerobic chemostat culture-3 Nitrogen-limited Aerobic chemostat culture-1 Nitrogen-limited Aerobic chemostat culture-2 Nitrogen-limited Aerobic chemostat culture-3 Nitorgen-limited Anaerobic chemostat culture-1 Nitrogen-limited Anaerobic chemostat culture-3 Nitrogen-limited Anaerobic chemostat culture-2 CENPK113-7D glucose/ethanol limited chemostat -1 CENPK113-7D glucose/ethanol limited chemostat -2 CENPK-113-7D glucose/ethanol limited chemostat -3 CENPK113-7D glucose/ethanol limited chemostat -4 Ethanol limited chemostat D=0.1/h -1 Ethanol limited chemostat D= 0.1 /h -2 Ethanol limited chemostat D=0.1/h -3 Acetate limited chemostat culture D=0.1/h -1 Acetate limited chemostat culture D=0.1/h -2 Acetate limited chemostat D=0.1/h -3 Maltose limited chemostat culture D=0.1/h -3 Anaerobic glucose limited chemostat culture with 100%CO2 Anaerobic glucose limited chemostat culture with 100% CO2 D=0.1/h -2 Anaerobic glucose limited chemostat culture with 100% CO2 D=0.1/h -3 Aerobic glucose limited chemostat culture with 79% CO2 D=0.1/h -1 Aerobic glucose limited chemostat culture with 79% CO2 D=0.1/h -2 Aerobic glucose limited chemostat culture with 79% CO2 D=0.1/h -3 Aerobic nitrogen limited chemostat culture with 79% CO2 D=0.1/h -1 Aerobic nitrogen limited chemostat culture with 79% CO2 D=0.1/h -2 Aerobic nitrogen limited chemostat culture with 79% CO2 D=0.1/h -3 Carbon-limited anaerobic chemostat with benzoate -1 Carbon-limited anaerobic chemostat with benzoate -2 Carbon-limited anaerobic chemostat with benzoate -3 C-lim Anaerobic chemostat dilution rate 0.05h-1 - 1 C-lim Anaerobic chemostat dilution rate 0.05h-1 - 2 C-lim Anaerobic chemostat dilution rate 0.05h-1 - 3 Aerobic galactose C-lim chemostat culture-1 Aerobic galactose C-lim chemostat culture-2 Aerobic galactose C-lim chemostat culture-3 Aerobic galactose C-lim chemostat culture-4 Aerobic galactose C-lim chemostat culture-5 Aerobic galactose C-lim chemostat culture-6 Aerobic S-lim chemostat culture-1 Aerobic S-lim chemostat culture-2 C-lim Anaerobic chemostat dilution rate 0.03h-1 - 1 N-lim Anaerobic chemostat dilution rate 0.03h-1 - 2 C-lim Anaerobic chemostat dilution rate 0.2h-1 - 1 C-lim Anaerobic chemostat dilution rate 0.2h-1 - 2 Aerobic pH3.5 C-lim chemostat culture-1 Aerobic pH3.5 C-lim chemostat culture-2 Aerobic pH3.5 C-lim chemostat culture-3 Aerobic pH6.5 C-lim chemostat culture-1 Aerobic pH6.5 C-lim chemostat culture-2 Aerobic pH6.5 C-lim chemostat culture-3 N-lim Anaerobic chemostat dilution rate 0.2h-1 - 1 N-lim Anaerobic chemostat dilution rate 0.2h-1 - 2 C-lim Anaerobic chemostat dilution rate 0.03h-1 - 2 C-lim Anaerobic chemostat dilution rate 0.03h-1 - 3 Acetate limited chemostat culture D=0.1/h -4 Ethanol limited chemostat culture D=0.1/h -4 N-lim Anaerobic chemostat dilution rate 0.2h-1 - 3 N-lim Anaerobic chemostat dilution rate 0.03h-1 - 3 N-lim Anaerobic chemostat dilution rate 0.2h-1 - 4 Anaerobic carbon limited with methionine as N-source Anaerobic carbon limited with methionine as N-source -2 Anaerobic carbon limited with methionine as N-source -3 Aerobic glucose limited chemostat with anaerobic factors (tween and ergosterol) -1 Aerobic glucose limited chemostat with anaerobic factors (tween and ergosterol) -2 Aerobic glucose limited chemostat with anaerobic factors (tween and ergosterol) -3 Aerobic phosphorus limited chemostat with anaerobic factors (tween and ergosterol) -1 Aerobic phosphorus limited chemostat with anaerobic factors (tween and ergosterol) -2 Aerobic phosphorus limited chemostat with anaerobic factors (tween and ergosterol) -3 Anaerobic glucose limited chemostat with methionine as sulfur source-1 Anaerobic glucose limited chemostat with methionine as sulfur source-2 Anaerobic glucose limited chemostat with methionine as sulfur source-3 Anaerobic nitrogen limited chemostat with methionine as nitrogen source-1 Anaerobic nitrogen limited chemostat with methionine as nitrogen source-2 Anaerobic nitrogen limited chemostat with methionine as nitrogen source-3 Anaerobic nitrogen limited chemostat with methionine as nitrogen and sulfur source-1 Anaerobic nitrogen limited chemostat with methionine as nitrogen and sulfur source-2 Anaerobic nitrogen limited chemostat with methionine as nitrogen and sulfur source-3 Anaerobic sulfur limited chemostat -1 Aerobic glucose limited chemostat with Phenylalanine as N-source-1 Aerobic glucose limited chemostat with Phenylalanine as N-source-2 Aerobic glucose limited chemostat with leucine as nitrogen source-1 Aerobic glucose limited chemostat with leucine as nitrogen source-2 Iron limited chemostat cultures with ethanol as a carbon source Iron limited chemostat cultures with ethanol as a carbon source-2 Anaerobic nitrogen limited chemostat 0.03h-1 -1 Anaerobic glucose limited chemostat Aerobic glucose limited chemostat with 25 mM formate-1 Aerobic glucose limited 1 Aerobic glucose limited 2 Aerobic glucose limited 3 Aerobic nitrogen limited 1 Aerobic nitrogen limited 3 Aerobic phosphorus limited 1 Aerobic phosphorus limited 2 Aerobic phosphorus limited 3 Aerobic sulfur limited 1 Aerobic sulfur limited 2 Aerobic sulfur limited 3 Anaerobic carbon limited 1 Anaerobic nitrogen limited 1 Anaerobic nitrogen limited 2 Anaerobic nitrogen limited 3 Anaerobic phosphorus limited 1 Anaerobic phosphorus limited 2 Anaerobic phosphorus limited 3 Anaerobic sulfur limited 1 Anaerobic sulfur limited 2 Anaerobic sulfur limited 3 Aerobic sulfur limited culture (cDNA from total RNA)-2 C-lim aerobic chemostat with 25mM formate CENPK113-7D glucose/ethanol (19mM) limited chemostat -1 CENPK113-7D glucose/ethanol (19mM) limited chemostat -2 CENPK113-7D glucose/ethanol (19mM) limited chemostat -3 C-lim Aerobic chemostat with maltose as C-source 1
SLA1 0.06 -0.01 -0.01 -0.28 -0.43 0.03 0.11 0.06 0.06 -0.05 0.10 0.19 0.11 0.08 0.08 0.01 0.11 0.11 0.06 0.01 0.04 -0.26 -0.23 -0.20 -0.13 -0.13 -0.09 -0.22 -0.33 -0.26 0.04 -0.03 0.02 -0.07 -0.05 -0.07 0.00 -0.10 -0.02 0.01 -0.01 -0.01 -0.08 -0.15 -0.11 -0.04 -0.00 0.26 0.32 0.28 0.28 0.20 0.28 -0.09 0.01 0.11 0.30 0.26 0.38 0.22 0.21 0.16 -0.07 -0.09 -0.10 0.01 0.05 0.09 0.08 -0.07 0.02 0.00 -0.05 -0.05 -0.21 -0.13 -0.10 -0.19 -0.16 0.05 0.03 0.08 -0.16 -0.10 -0.15 0.20 -0.05 0.03 -0.12 0.01 0.02 -0.07 -0.13 -0.11 0.18 0.18 -0.04 0.04 -0.14 -0.12 -0.14 -0.10 -0.04 -0.06 -0.12 -0.01 0.02 -0.09 0.02 -0.02 -0.16 -0.03 -0.17 0.09 -0.10 -0.13 -0.06 -0.09 -0.05 -0.10 -0.06 0.01 0.02 0.00 -0.18 -0.08 -0.11 0.02 -0.02 -0.02 -0.04 0.02 -0.02 0.04 0.07 0.06 0.11 0.05 0.07 0.07 0.02 -0.06 -0.01 -0.07 -0.03 0.03 0.15 0.09 0.05 0.02 0.12 0.04 0.03 0.07 0.00 0.00 0.13 0.11 -0.02 -0.09 -0.10 0.06 -0.00 -0.01 0.09 -0.06 0.07 0.14 0.04 -0.12